PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G012600.1.p
Common NameGLYMA_16G012600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 383aa    MW: 41951.5 Da    PI: 4.7586
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G012600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-19114163255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Glyma.16G012600.1.p 114 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDAEARRIRG 163
                          69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-32114172IPR001471AP2/ERF domain
SMARTSM003803.3E-37114177IPR001471AP2/ERF domain
CDDcd000189.29E-32114172No hitNo description
PROSITE profilePS5103224.118114171IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-22114172IPR016177DNA-binding domain
PRINTSPR003671.3E-11115126IPR001471AP2/ERF domain
PfamPF008471.2E-11115163IPR001471AP2/ERF domain
PRINTSPR003671.3E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MCGGAIISDF IPAGPASGAR RVTADILWPS LRKRFSKPLL DDDFEAGFRE FKDDSEIEDV  60
DDEDDEDEEE LKKKPFGFSR SSNKAASKPL SRGSATVESK GQAEKCAKRK RKNQYRGIRQ  120
RPWGKWAAEI RDPRKGVRVW LGTFSTAEEA ARAYDAEARR IRGKKAKVNF PDEPSGAAAS  180
SKRLKVNPEA QPMKENLNTV KPKMNQMFNF GHNLEGYYSP IDQVEQKPLV NQYVNPAPFP  240
GNGVQVSPVT PSADVTAYFS SEHSSNSFDY SDLGWGEQVP KTPEISSLLS AAPLEGAADQ  300
VQKTNNSQDV VAAQDDSAKT LSEELADIES QLKFFETPSF LDEAWADATL ASLLGGDATH  360
DAAGNPMNLW SFDDLPSMAG VF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20114171563ATERF1
3gcc_A2e-20114171563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.548520.0cotyledon| flower| hypocotyl| leaf| meristem| root| seed coat| somatic embryo| stem| vegetative bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5372200.0AF537220.1 Glycine max ethylene responsive protein (EREB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598772.10.0PREDICTED: ethylene responsive protein isoform X1
RefseqXP_006598773.10.0PREDICTED: ethylene responsive protein isoform X1
TrEMBLA0A0R0FJQ70.0A0A0R0FJQ7_SOYBN; Uncharacterized protein
STRINGGLYMA16G01500.50.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-57related to AP2 12